EOS102424

Name:	rhodamine123
EOS:	EOS102424
CAS:	108608-81-7 62669-70-9 104114-27-4
Synonyms:	rhodamine123
Tags:
Compound Library:	Bioactive Compound Library ECBL Pilot Compounds

Basic Properties:

Formula:	C21H17ClN2O3
Molecular Weight:	380.83
Rotatable Bond Donors:	2
clogP:	4.47
Topological Polar Surface Area:	89.31
Lipinski's RO5:	MW: 380.83 HBA: 5 HBD: 3 RB: 2 LogP: 4.47
Rule of Three:	MW: 380.83 HBA: 5 HBD: 3 RB: 2 LogP: 4.47

Additional Data:

Other Descriptors

Feature	Value
FP3 Fingerprint:	0.05
NHs/OHs:	3
Nitrogens and Oxygens:	5
Aliphatic Carbocycles:	1
Aliphatic Heterocycles:	1
Aliphatic Rings:	2
Aromatic Carbocycles:	2
Aromatic Heterocycles:	0
Aromatic Rings:	2
Heteroatoms:	6
Radical Electrons:	0
Saturated Carbocycles:	0
Saturated Heterocycles:	0
Saturated Rings:	0
Valence Electrons:	136
Rings:	4
Aliphatic Carboxylic Acids:	0
Aliphatic Hydroxyl Groups:	0
Aliphatic Hydroxyl Groups Excluding Tert-OH:	0
Nitrogen Functional Groups Attached to Aromatics:	1
Aromatic Carboxylic Acide:	0
Aromatic Nitrogens:	0
Aromatic Amines:	0
Aromatic Hydroxyl Groups:	0
Carboxylic Acids (COO):	0
Carboxylic Acids (COO2):	0
Carbonyl Oxygens:	1
Carbonyl Oxygens, excluding COOH:	1
Thiocarbonyls:	0
C(OH)CCN-Ctert-alkyls/C(OH)CCNcyclics:	0
Imines:	0
Tertiary Amines:	0
Secondary Amines:	1
Primary Amines:	1
Hydroxylamine Groups:	0
XCCNR Groups:	0
Tert-alicyclic Amines (no heteroatoms, not quinine-like bridged N):	0
H-pyrrole nitrogens:	0
Thiol groups:	0
Aldehydes:	0
Alkyl Carbamates (subject to hydrolysis):	0
Alkyl Halides:	0
Allylic Oxidation Sites excluding Steroid Dienone:	0
Amides:	0
Amidine Groups:	0
Anilines:	1
Aryl Methyl Sites for Hydroxylation:	0
Azide Groups:	0
Azo Groups:	0
Barbiturate Groups:	0
Benzene Rings:	3
Benzodiazepines with no additional Fused Rings:	0
Bicyclic:	2
Diazo Groups:	0
Dihydropyridines:	0
Epoxide Rings:	0
Esters:	1
Ether Oxygens (including phenoxy):	1
Furan Rings:	0
Guanidine Groups:	0
Halogens:	1
Hydrazine Groups:	0
Hydrazone Groups:	0
Imidazole Rings:	0
Imide Groups:	0
Isocyanates:	0
Isothiocyanates:	0
Ketones:	0
Ketones excluding diaryl, a,b-unsat. dienones, heteroatom on Calpha:	0
Beta Lactams:	0
Cyclic Esters (Lactones):	0
Methoxy Groups -OCH3:	1
Morpholine Rings:	0
Nitriles:	0
Nitro Groups:	0
Nitro Benzene Ring Substituents:	0
Non-ortho Nitro Benzene Ring Substituents:	0
Nitroso Groups, excluding NO2:	0
Oxazole Rings:	0
Oxime Groups:	0
Para-hydroxylation Sites:	0
Phenols:	0
Phenolic OH excluding Ortho Intramolecular Hbond substituents:	0
Phosphoric Acid Groups:	0
Phosphoric Ester Groups:	0
Piperdine Rings:	0
Piperzine Rings:	0
Primary Amides:	0
Primary Sulfonamides:	0
Pyridine Rings:	0
Guarternary Nitrogens:	0
Thioethers:	0
Sulfonamides:	0
Sulfone Groups:	0
Terminal Acetylenes:	0
Tetrazole Rings:	0
Thiazole Rings:	0
Thiocyanates:	0
Thiophene Rings:	0
Unbranched Alkanes of at least 4 members (excludes halogenated alkanes):	0
Urea Groups:	0
BCUT2D - Gasteiger Charge Eigenvalue High:	2.21
BCUT2D - Gasteiger Charge Eigenvalue Low:	-2.17
BCUT2D - Crippen Lowgp Eigenvalue High:	2.41
BCUT2D - Crippen Lowgp Eigenvalue Low:	-2.05
BCUT2D - Crippen MR Eigenvalue High:	6.08
BCUT2D - Crippen MR Eigenvalue Low:	0.06
BCUT2D - Mass Eigenvalue High:	35.45
BCUT2D - Mass Eigenvalue Low:	9.91
Balaban’s J:	0.00
Bertz CT:	1183.58
Chi 0:	18.26
Chi 0n:	14.48
Chi 0v:	15.30
Chi 1:	12.58
Chi 1n:	8.07
Chi 1v:	8.07
Chi 2n:	5.98
Chi 2v:	5.98
Chi 3v:	4.35
Chi 3v:	4.35
Chi 4n:	3.19
Chi 4v:	3.19
Morgan Fingerprint Density (1):	1.04
Morgan Fingerprint Density (2):	1.81
Morgan Fingerprint Density (3):	2.59
CSP3 Fraction:	0.05
Hall Kier Alpha:	-3.31
Heavy Atoms:	27.00
Ipc descriptor:	1063061.20
Kappa 1:	18.48
Kappa 2:	7.13
Kappa 3:	3.13
Labute ASA:	161.19
Max ABS Estate Index:	12.29
Max ABS Partial Charge:	0.47
Max Estate Index:	12.29
Max Partial Charge:	0.34
Minimal ABS Estate Index:	0.00
Minimal ABS Partial Charge:	0.34
Minimal State Index:	-0.41
Minimal Partial Charge:	-0.47
Molar Refractivity:	107.13
Quantitative Estimation of Drug-likeness (QED):	0.30

External Databases

DB
ACToR (62669-70-9)
PubChem TPS (14902483)
FDA SRS (1N3CZ14C5O)
eMolecules (718446)
PubChem (9929799)
ChEBI (8828)
ChemicalBook (CB2702364)
ChEMBL (CHEMBL176049)
Mcule (MCULE-4634113402)
MolPort (MolPort-003-939-227)
SureChEMBL (SCHEMBL3808879)

Structure formats:

Smiles

InChI

SDF

EOS102424
     RDKit          3D

27 29  0  0  0  0  0  0  0  0999 V2000
   -1.6861   -0.7012    3.1915 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4583   -1.0839    1.8392 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4817   -0.6878    1.0489 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4921   -0.1034    1.4010 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2386   -1.1289   -0.3346 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3030   -1.7850   -0.9577 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1816   -2.2246   -2.2725 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0020   -1.9986   -2.9740 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9473   -1.3247   -2.3621 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0469   -0.8818   -1.0365 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0975   -0.1137   -0.4829 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2003   -0.7591   -0.0272 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2807   -2.2140   -0.0713 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3436   -2.8921    0.3733 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4953   -2.1499    0.9391 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5391   -2.7775    1.3738 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.4182   -0.6708    0.9942 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3365   -0.0244    0.5389 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3042    1.3611    0.6184 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1971    2.0254    0.1608 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2146    3.4163    0.2621 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1270    4.1637   -0.1854 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1411    5.5654   -0.0849 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9738    3.5095   -0.7347 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9842    2.1192   -0.8333 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1005    1.3609   -0.3839 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
 15 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  1  0
 20 21  2  0
 21 22  1  0
 22 23  1  0
 22 24  2  0
 24 25  1  0
 25 26  2  0
 10  5  1  0
 26 11  1  0
 18 12  1  0
 26 20  1  0
M  END

$$$$

Similar ECBD compounds (0 entries):

	ECBD ID	Similarity	Structure	SDF

Similar ZINC compounds (4 entries):

ZINC ID	Similarity	SDF
ZINC20111388	0.87	ZINC20111388 RDKit 3D 25 28 0 0 0 0 0 0 0 0999 V2000 -2.1789 -4.8305 -1.4575 N 0 0 0 0 0 0 0 0 0 0 0 0 -1.6749 -3.6701 -1.1899 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.4317 -2.4286 -1.4793 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.8796 -1.2432 -1.2009 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.5490 -1.1114 -0.6202 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.0282 0.1132 -0.3556 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.8033 1.3428 -0.6631 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.8084 1.7854 -1.9928 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.4573 2.9639 -2.3547 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.0972 3.7292 -1.3856 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.0957 3.3112 -0.0583 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.4654 2.1179 0.3036 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.5081 1.7846 1.7352 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.2840 2.5800 2.6304 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.9021 0.5046 1.9032 O 0 0 0 0 0 0 0 0 0 0 0 0 1.3225 0.1462 0.2445 C 0 0 0 0 0 0 0 0 0 0 0 0 1.9529 1.3574 0.5436 C 0 0 0 0 0 0 0 0 0 0 0 0 3.2264 1.3795 1.1099 C 0 0 0 0 0 0 0 0 0 0 0 0 3.8911 0.1859 1.3840 C 0 0 0 0 0 0 0 0 0 0 0 0 5.1756 0.2047 1.9539 N 0 0 0 0 0 0 0 0 0 0 0 0 3.2722 -1.0263 1.0860 C 0 0 0 0 0 0 0 0 0 0 0 0 1.9977 -1.0410 0.5196 C 0 0 0 0 0 0 0 0 0 0 0 0 1.4581 -2.2707 0.2503 O 0 0 0 0 0 0 0 0 0 0 0 0 0.1947 -2.3398 -0.3205 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.3273 -3.5450 -0.5858 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 2 0 2 3 1 0 3 4 2 0 4 5 1 0 5 6 2 0 6 7 1 0 7 8 2 0 8 9 1 0 9 10 2 0 10 11 1 0 11 12 2 0 12 13 1 0 13 14 2 0 13 15 1 0 6 16 1 0 16 17 2 0 17 18 1 0 18 19 2 0 19 20 1 0 19 21 1 0 21 22 2 0 22 23 1 0 23 24 1 0 24 25 2 0 25 2 1 0 24 5 1 0 12 7 1 0 22 16 1 0 M END $$$$
ZINC4344388	0.72	ZINC4344388 RDKit 3D 26 29 0 0 0 0 0 0 0 0999 V2000 3.6707 -1.0068 -2.9458 C 0 0 0 0 0 0 0 0 0 0 0 0 3.4201 -1.3578 -1.5884 O 0 0 0 0 0 0 0 0 0 0 0 0 2.4408 -0.5851 -1.0578 C 0 0 0 0 0 0 0 0 0 0 0 0 1.8360 0.2958 -1.6449 O 0 0 0 0 0 0 0 0 0 0 0 0 2.2002 -0.9834 0.3522 C 0 0 0 0 0 0 0 0 0 0 0 0 3.2315 -1.6352 1.0385 C 0 0 0 0 0 0 0 0 0 0 0 0 3.0752 -2.0196 2.3671 C 0 0 0 0 0 0 0 0 0 0 0 0 1.8820 -1.7542 3.0275 C 0 0 0 0 0 0 0 0 0 0 0 0 0.8492 -1.1064 2.3556 C 0 0 0 0 0 0 0 0 0 0 0 0 0.9925 -0.7087 1.0183 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.1818 -0.0527 0.3899 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.3583 1.2874 0.5018 C 0 0 0 0 0 0 0 0 0 0 0 0 0.6011 2.1030 1.2352 C 0 0 0 0 0 0 0 0 0 0 0 0 0.4758 3.4284 1.3563 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.6817 4.1131 0.7313 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.8278 5.3257 0.8379 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.6604 3.2881 -0.0165 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.5025 1.9618 -0.1198 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.4463 1.2302 -0.8280 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.2746 -0.1228 -0.9583 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.2388 -0.8079 -1.6953 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.1125 -2.1804 -1.8576 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.0513 -2.8568 -2.5765 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.0498 -2.8782 -1.3011 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.0941 -2.1810 -0.5662 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.1950 -0.7967 -0.3866 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 2 0 3 5 1 0 5 6 2 0 6 7 1 0 7 8 2 0 8 9 1 0 9 10 2 0 10 11 1 0 11 12 2 0 12 13 1 0 13 14 2 0 14 15 1 0 15 16 2 0 15 17 1 0 17 18 2 0 18 19 1 0 19 20 1 0 20 21 2 0 21 22 1 0 22 23 1 0 22 24 2 0 24 25 1 0 25 26 2 0 10 5 1 0 26 11 1 0 18 12 1 0 26 20 1 0 M END $$$$
ZINC4099018	1.0	ZINC4099018 RDKit 3D 26 29 0 0 0 0 0 0 0 0999 V2000 3.4587 -2.1059 2.5222 C 0 0 0 0 0 0 0 0 0 0 0 0 3.4792 -1.5072 1.2301 O 0 0 0 0 0 0 0 0 0 0 0 0 2.3773 -0.7435 1.0287 C 0 0 0 0 0 0 0 0 0 0 0 0 1.4731 -0.5802 1.8301 O 0 0 0 0 0 0 0 0 0 0 0 0 2.4273 -0.1426 -0.3287 C 0 0 0 0 0 0 0 0 0 0 0 0 3.6739 -0.0341 -0.9565 C 0 0 0 0 0 0 0 0 0 0 0 0 3.7913 0.5326 -2.2224 C 0 0 0 0 0 0 0 0 0 0 0 0 2.6591 1.0004 -2.8775 C 0 0 0 0 0 0 0 0 0 0 0 0 1.4138 0.8984 -2.2637 C 0 0 0 0 0 0 0 0 0 0 0 0 1.2794 0.3343 -0.9865 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.0981 0.2503 -0.4393 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.6299 1.2972 0.2396 C 0 0 0 0 0 0 0 0 0 0 0 0 0.1418 2.5163 0.4461 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.3363 3.5664 1.1215 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.7058 3.5062 1.6859 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.1988 4.5103 2.3354 N 0 0 0 0 0 0 0 0 0 0 0 0 -2.4965 2.2696 1.4801 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.9842 1.2356 0.7993 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.7610 0.0975 0.6288 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.2310 -0.9708 -0.0452 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.0433 -2.0973 -0.1727 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.5752 -3.2240 -0.8456 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.3906 -4.3613 -0.9765 N 0 0 0 0 0 0 0 0 0 0 0 0 -1.2920 -3.2137 -1.3891 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.4857 -2.0843 -1.2591 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.9466 -0.9501 -0.5849 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 2 0 3 5 1 0 5 6 2 0 6 7 1 0 7 8 2 0 8 9 1 0 9 10 2 0 10 11 1 0 11 12 2 0 12 13 1 0 13 14 2 0 14 15 1 0 15 16 2 0 15 17 1 0 17 18 2 0 18 19 1 0 19 20 1 0 20 21 2 0 21 22 1 0 22 23 1 0 22 24 2 0 24 25 1 0 25 26 2 0 10 5 1 0 26 11 1 0 18 12 1 0 26 20 1 0 M END $$$$
ZINC3877659	0.9	ZINC3877659 RDKit 3D 27 30 0 0 0 0 0 0 0 0999 V2000 4.9746 2.4048 2.1323 C 0 0 0 0 0 0 0 0 0 0 0 0 3.5915 1.8037 2.1108 C 0 0 0 0 0 0 0 0 0 0 0 0 3.5025 0.9450 0.9777 O 0 0 0 0 0 0 0 0 0 0 0 0 2.2757 0.3739 0.8927 C 0 0 0 0 0 0 0 0 0 0 0 0 1.3530 0.5593 1.6676 O 0 0 0 0 0 0 0 0 0 0 0 0 2.2171 -0.5050 -0.3027 C 0 0 0 0 0 0 0 0 0 0 0 0 3.4224 -0.9889 -0.8252 C 0 0 0 0 0 0 0 0 0 0 0 0 3.4352 -1.8289 -1.9350 C 0 0 0 0 0 0 0 0 0 0 0 0 2.2383 -2.1972 -2.5366 C 0 0 0 0 0 0 0 0 0 0 0 0 1.0333 -1.7227 -2.0260 C 0 0 0 0 0 0 0 0 0 0 0 0 1.0031 -0.8795 -0.9057 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.3338 -0.4094 -0.4632 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.0757 -1.1597 0.3890 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.5720 -2.4339 0.8861 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.2620 -3.1987 1.7384 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.5960 -2.7492 2.2031 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.2910 -3.4728 3.0196 N 0 0 0 0 0 0 0 0 0 0 0 0 -3.1146 -1.4543 1.7023 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.3943 -0.7127 0.8500 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.9198 0.4930 0.4049 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.1752 1.2653 -0.4469 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.7381 2.4763 -0.8491 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.0422 3.3170 -1.7153 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.6059 4.5382 -2.1233 N 0 0 0 0 0 0 0 0 0 0 0 0 -0.7829 2.9365 -2.1750 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.2265 1.7245 -1.7700 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.9169 0.8755 -0.9006 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 1 0 4 5 2 0 4 6 1 0 6 7 2 0 7 8 1 0 8 9 2 0 9 10 1 0 10 11 2 0 11 12 1 0 12 13 2 0 13 14 1 0 14 15 2 0 15 16 1 0 16 17 2 0 16 18 1 0 18 19 2 0 19 20 1 0 20 21 1 0 21 22 2 0 22 23 1 0 23 24 1 0 23 25 2 0 25 26 1 0 26 27 2 0 11 6 1 0 27 12 1 0 19 13 1 0 27 21 1 0 M END $$$$

Assays:

Name	Assay stage	Target	Activity
Single dose inhibition of SARS-CoV-2 cytopathic effect in VeroE6	primary assay	Organism Severe acute respiratory syndrome-related coronavirus	inactive
Dose-dependent inhibition of SARS-CoV-2 cytopathic effect in VeroE6	confirmatory assay	Organism Severe acute respiratory syndrome-related coronavirus	inactive
Single dose inhibition of SARS-CoV-2 3CL-Pro	primary assay	Replicase polyprotein 1ab	inactive

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