EOS102285

Name:	Ethidium bromide
EOS:	EOS102285
CAS:	1239-45-8 3546-21-2
Synonyms:	Ethidium bromide HOMIDIUM
Tags:
Compound Library:	Bioactive Compound Library ECBL Pilot Compounds

Basic Properties:

Formula:	C21H20BrN3
Molecular Weight:	394.32
Rotatable Bond Donors:	2
clogP:	1.14
Topological Polar Surface Area:	55.92
Lipinski's RO5:	MW: 394.32 HBA: 3 HBD: 4 RB: 2 LogP: 1.14
Rule of Three:	MW: 394.32 HBA: 3 HBD: 4 RB: 2 LogP: 1.14

Additional Data:

Other Descriptors

Feature	Value
FP3 Fingerprint:	0.10
NHs/OHs:	4
Nitrogens and Oxygens:	3
Aliphatic Carbocycles:	0
Aliphatic Heterocycles:	0
Aliphatic Rings:	0
Aromatic Carbocycles:	3
Aromatic Heterocycles:	1
Aromatic Rings:	4
Heteroatoms:	4
Radical Electrons:	0
Saturated Carbocycles:	0
Saturated Heterocycles:	0
Saturated Rings:	0
Valence Electrons:	126
Rings:	4
Aliphatic Carboxylic Acids:	0
Aliphatic Hydroxyl Groups:	0
Aliphatic Hydroxyl Groups Excluding Tert-OH:	0
Nitrogen Functional Groups Attached to Aromatics:	2
Aromatic Carboxylic Acide:	0
Aromatic Nitrogens:	1
Aromatic Amines:	0
Aromatic Hydroxyl Groups:	0
Carboxylic Acids (COO):	0
Carboxylic Acids (COO2):	0
Carbonyl Oxygens:	0
Carbonyl Oxygens, excluding COOH:	0
Thiocarbonyls:	0
C(OH)CCN-Ctert-alkyls/C(OH)CCNcyclics:	0
Imines:	0
Tertiary Amines:	1
Secondary Amines:	0
Primary Amines:	2
Hydroxylamine Groups:	0
XCCNR Groups:	0
Tert-alicyclic Amines (no heteroatoms, not quinine-like bridged N):	0
H-pyrrole nitrogens:	0
Thiol groups:	0
Aldehydes:	0
Alkyl Carbamates (subject to hydrolysis):	0
Alkyl Halides:	0
Allylic Oxidation Sites excluding Steroid Dienone:	0
Amides:	0
Amidine Groups:	0
Anilines:	2
Aryl Methyl Sites for Hydroxylation:	1
Azide Groups:	0
Azo Groups:	0
Barbiturate Groups:	0
Benzene Rings:	3
Benzodiazepines with no additional Fused Rings:	0
Bicyclic:	3
Diazo Groups:	0
Dihydropyridines:	0
Epoxide Rings:	0
Esters:	0
Ether Oxygens (including phenoxy):	0
Furan Rings:	0
Guanidine Groups:	0
Halogens:	1
Hydrazine Groups:	0
Hydrazone Groups:	0
Imidazole Rings:	0
Imide Groups:	0
Isocyanates:	0
Isothiocyanates:	0
Ketones:	0
Ketones excluding diaryl, a,b-unsat. dienones, heteroatom on Calpha:	0
Beta Lactams:	0
Cyclic Esters (Lactones):	0
Methoxy Groups -OCH3:	0
Morpholine Rings:	0
Nitriles:	0
Nitro Groups:	0
Nitro Benzene Ring Substituents:	0
Non-ortho Nitro Benzene Ring Substituents:	0
Nitroso Groups, excluding NO2:	0
Oxazole Rings:	0
Oxime Groups:	0
Para-hydroxylation Sites:	0
Phenols:	0
Phenolic OH excluding Ortho Intramolecular Hbond substituents:	0
Phosphoric Acid Groups:	0
Phosphoric Ester Groups:	0
Piperdine Rings:	0
Piperzine Rings:	0
Primary Amides:	0
Primary Sulfonamides:	0
Pyridine Rings:	1
Guarternary Nitrogens:	0
Thioethers:	0
Sulfonamides:	0
Sulfone Groups:	0
Terminal Acetylenes:	0
Tetrazole Rings:	0
Thiazole Rings:	0
Thiocyanates:	0
Thiophene Rings:	0
Unbranched Alkanes of at least 4 members (excludes halogenated alkanes):	0
Urea Groups:	0
BCUT2D - Gasteiger Charge Eigenvalue High:	2.22
BCUT2D - Gasteiger Charge Eigenvalue Low:	-2.12
BCUT2D - Crippen Lowgp Eigenvalue High:	2.33
BCUT2D - Crippen Lowgp Eigenvalue Low:	-3.00
BCUT2D - Crippen MR Eigenvalue High:	6.10
BCUT2D - Crippen MR Eigenvalue Low:	-0.66
BCUT2D - Mass Eigenvalue High:	79.90
BCUT2D - Mass Eigenvalue Low:	9.98
Balaban’s J:	0.00
Bertz CT:	1059.06
Chi 0:	16.68
Chi 0n:	14.04
Chi 0v:	15.62
Chi 1:	11.69
Chi 1n:	8.18
Chi 1v:	8.18
Chi 2n:	6.04
Chi 2v:	6.04
Chi 3v:	4.53
Chi 3v:	4.53
Chi 4n:	3.49
Chi 4v:	3.49
Morgan Fingerprint Density (1):	0.76
Morgan Fingerprint Density (2):	1.40
Morgan Fingerprint Density (3):	2.08
CSP3 Fraction:	0.10
Hall Kier Alpha:	-2.59
Heavy Atoms:	25.00
Ipc descriptor:	449292.44
Kappa 1:	17.24
Kappa 2:	6.73
Kappa 3:	2.83
Labute ASA:	157.20
Max ABS Estate Index:	6.10
Max ABS Partial Charge:	1.00
Max Estate Index:	6.10
Max Partial Charge:	0.22
Minimal ABS Estate Index:	0.00
Minimal ABS Partial Charge:	0.22
Minimal State Index:	0.00
Minimal Partial Charge:	-1.00
Molar Refractivity:	101.58
Quantitative Estimation of Drug-likeness (QED):	0.30

External Databases

DB
FDA SRS (059NUO2Z1L)
ACToR (1239-45-8)
PubChem (53630235)
PubChem TPS (14756677)
Brenda (49041)
ChEBI (4883)
eMolecules (510762)
KEGG (C11161)
ChemicalBook (CB7406991)
ChEMBL (CHEMBL284328)
CompTox (DTXSID8025258)
Mcule (MCULE-8684380812)
MolPort (MolPort-003-666-501)
SureChEMBL (SCHEMBL20520)

Structure formats:

Smiles

InChI

SDF

EOS102285
     RDKit          3D

25 27  0  0  0  0  0  0  0  0999 V2000
   -0.0036   -2.7748    1.9394 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0492   -2.5738    0.4395 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3483   -1.1460    0.1785 N   0  0  0  0  0  4  0  0  0  0  0  0
    0.6692   -0.2580    0.0054 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0280   -0.7927    0.0793 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7927   -0.6409    1.2414 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0937   -1.1351    1.3075 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6472   -1.7828    0.2072 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9020   -1.9348   -0.9583 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6013   -1.4396   -1.0214 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3869    1.1017   -0.2373 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4059    2.0549   -0.4144 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1297    3.3995   -0.6556 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1773    4.3180   -0.8242 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1931    3.8136   -0.7260 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2167    2.8847   -0.5581 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9514    1.5247   -0.3143 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9810    0.5800   -0.1549 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3391    0.9341   -0.2337 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3519   -0.0097   -0.0823 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0270   -1.3394    0.1524 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0340   -2.3051    0.3059 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6859   -1.7080    0.2355 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6527   -0.7703    0.0886 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 Br  0  0  0  0  0 15  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
  4 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  1  0
 13 15  2  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  2  0
 21 22  1  0
 21 23  1  0
 23 24  2  0
 24  3  1  0
 10  5  1  0
 17 11  1  0
 24 18  1  0
M  CHG  2   3   1  25  -1
M  END

$$$$

Similar ECBD compounds (0 entries):

	ECBD ID	Similarity	Structure	SDF

Similar ZINC compounds (4 entries):

ZINC ID	Similarity	SDF
ZINC119632	0.99	ZINC119632 RDKit 3D 24 27 0 0 0 0 0 0 0 0999 V2000 0.5322 -3.1478 -1.1265 C 0 0 0 0 0 0 0 0 0 0 0 0 0.5179 -2.5461 0.2628 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.0859 -1.1959 0.1700 N 0 0 0 0 0 4 0 0 0 0 0 0 0.7093 -0.1058 -0.0120 C 0 0 0 0 0 0 0 0 0 0 0 0 2.1488 -0.3484 -0.0935 C 0 0 0 0 0 0 0 0 0 0 0 0 2.9095 -0.5264 1.0676 C 0 0 0 0 0 0 0 0 0 0 0 0 4.2841 -0.7408 0.9925 C 0 0 0 0 0 0 0 0 0 0 0 0 4.9150 -0.7740 -0.2475 C 0 0 0 0 0 0 0 0 0 0 0 0 4.1733 -0.5911 -1.4108 C 0 0 0 0 0 0 0 0 0 0 0 0 2.7989 -0.3768 -1.3324 C 0 0 0 0 0 0 0 0 0 0 0 0 0.1365 1.1789 -0.1064 C 0 0 0 0 0 0 0 0 0 0 0 0 0.9185 2.3315 -0.3020 C 0 0 0 0 0 0 0 0 0 0 0 0 0.3549 3.6029 -0.3945 C 0 0 0 0 0 0 0 0 0 0 0 0 1.1721 4.7266 -0.5922 N 0 0 0 0 0 0 0 0 0 0 0 0 -1.0222 3.7389 -0.2884 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.8137 2.6107 -0.0900 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.2574 1.3219 0.0054 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.0507 0.1800 0.2168 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.4480 0.2550 0.3509 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.2247 -0.8804 0.5678 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.6169 -2.1260 0.6572 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.3832 -3.2812 0.8774 N 0 0 0 0 0 0 0 0 0 0 0 0 -2.2331 -2.2191 0.5249 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.4354 -1.0866 0.3029 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 2 0 4 5 1 0 5 6 2 0 6 7 1 0 7 8 2 0 8 9 1 0 9 10 2 0 4 11 1 0 11 12 2 0 12 13 1 0 13 14 1 0 13 15 2 0 15 16 1 0 16 17 2 0 17 18 1 0 18 19 2 0 19 20 1 0 20 21 2 0 21 22 1 0 21 23 1 0 23 24 2 0 24 3 1 0 10 5 1 0 17 11 1 0 24 18 1 0 M CHG 1 3 1 M END $$$$
ZINC622264	0.77	ZINC622264 RDKit 3D 31 34 0 0 0 0 0 0 0 0999 V2000 5.1154 1.1509 -1.2033 C 0 0 0 0 0 0 0 0 0 0 0 0 4.8744 0.5697 0.1740 C 0 0 0 0 0 0 0 0 0 0 0 0 4.4079 -0.8616 0.0520 N 0 0 0 0 0 4 0 0 0 0 0 0 4.1653 -1.3589 1.4525 C 0 0 0 0 0 0 0 0 0 0 0 0 5.5695 -1.6595 -0.5144 C 0 0 0 0 0 0 0 0 0 0 0 0 5.1823 -3.1191 -0.6324 C 0 0 0 0 0 0 0 0 0 0 0 0 3.1962 -1.0238 -0.8222 C 0 0 0 0 0 0 0 0 0 0 0 0 2.0135 -0.2389 -0.2806 C 0 0 0 0 0 0 0 0 0 0 0 0 0.8211 -0.4236 -1.2073 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.3616 0.2598 -0.6232 N 0 0 0 0 0 4 0 0 0 0 0 0 -1.2299 -0.4321 0.1686 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.8976 -1.8312 0.4306 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.2507 -2.8320 -0.4813 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.9371 -4.1660 -0.2300 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.2695 -4.5141 0.9405 C 0 0 0 0 0 0 0 0 0 0 0 0 0.0812 -3.5307 1.8606 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.2345 -2.1978 1.6072 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.3720 0.2033 0.6947 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.2833 -0.4718 1.5261 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.4144 0.1535 2.0480 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.2950 -0.5570 2.8778 N 0 0 0 0 0 0 0 0 0 0 0 0 -4.6522 1.4849 1.7366 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.7636 2.1701 0.9120 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.6182 1.5507 0.3793 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.7210 2.2344 -0.4607 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.9133 3.5786 -0.8256 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.0209 4.2460 -1.6613 C 0 0 0 0 0 0 0 0 0 0 0 0 0.0915 3.5783 -2.1562 C 0 0 0 0 0 0 0 0 0 0 0 0 1.0086 4.2328 -2.9931 N 0 0 0 0 0 0 0 0 0 0 0 0 0.2970 2.2456 -1.8060 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.5892 1.5593 -0.9629 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 1 0 3 5 1 0 5 6 1 0 3 7 1 0 7 8 1 0 8 9 1 0 9 10 1 0 10 11 2 0 11 12 1 0 12 13 2 0 13 14 1 0 14 15 2 0 15 16 1 0 16 17 2 0 11 18 1 0 18 19 2 0 19 20 1 0 20 21 1 0 20 22 2 0 22 23 1 0 23 24 2 0 24 25 1 0 25 26 2 0 26 27 1 0 27 28 2 0 28 29 1 0 28 30 1 0 30 31 2 0 31 10 1 0 17 12 1 0 24 18 1 0 31 25 1 0 M CHG 2 3 1 10 1 M END $$$$
ZINC3861660	0.77	ZINC3861660 RDKit 3D 23 26 0 0 0 0 0 0 0 0999 V2000 0.7750 -2.6155 -0.2470 C 0 0 0 0 0 0 0 0 0 0 0 0 0.6758 -1.1447 -0.1935 N 0 0 0 0 0 4 0 0 0 0 0 0 -0.5392 -0.5458 -0.2898 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.6918 -1.4297 -0.4438 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.1418 -1.7991 -1.7162 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.2503 -2.6298 -1.8649 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.9240 -3.0970 -0.7402 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.4910 -2.7336 0.5317 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.3821 -1.9028 0.6776 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.6393 0.8586 -0.2392 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.8757 1.5217 -0.3348 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.9758 2.9110 -0.2850 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.2295 3.5341 -0.3840 N 0 0 0 0 0 0 0 0 0 0 0 0 -0.8202 3.6655 -0.1363 C 0 0 0 0 0 0 0 0 0 0 0 0 0.4137 3.0275 -0.0399 C 0 0 0 0 0 0 0 0 0 0 0 0 0.5292 1.6263 -0.0888 C 0 0 0 0 0 0 0 0 0 0 0 0 1.7728 0.9745 0.0080 C 0 0 0 0 0 0 0 0 0 0 0 0 2.9793 1.6797 0.1596 C 0 0 0 0 0 0 0 0 0 0 0 0 4.2035 1.0225 0.2542 C 0 0 0 0 0 0 0 0 0 0 0 0 4.2497 -0.3649 0.1990 C 0 0 0 0 0 0 0 0 0 0 0 0 5.4751 -1.0433 0.2928 N 0 0 0 0 0 0 0 0 0 0 0 0 3.0637 -1.0808 0.0490 C 0 0 0 0 0 0 0 0 0 0 0 0 1.8228 -0.4345 -0.0477 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 2 0 3 4 1 0 4 5 2 0 5 6 1 0 6 7 2 0 7 8 1 0 8 9 2 0 3 10 1 0 10 11 2 0 11 12 1 0 12 13 1 0 12 14 2 0 14 15 1 0 15 16 2 0 16 17 1 0 17 18 2 0 18 19 1 0 19 20 2 0 20 21 1 0 20 22 1 0 22 23 2 0 23 2 1 0 9 4 1 0 16 10 1 0 23 17 1 0 M CHG 1 2 1 M END $$$$
ZINC1559822	0.77	ZINC1559822 RDKit 3D 28 31 0 0 0 0 0 0 0 0999 V2000 -4.1547 -0.5268 -1.3885 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.6771 0.1262 -0.1087 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.2645 0.5295 -0.3009 N 0 0 0 0 0 4 0 0 0 0 0 0 -1.2607 -0.3153 0.0626 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.6576 -1.5958 0.6462 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.6531 -2.7637 -0.1247 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.0144 -3.9875 0.4344 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.3793 -4.0575 1.7756 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.3814 -2.9061 2.5573 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.0196 -1.6837 1.9953 C 0 0 0 0 0 0 0 0 0 0 0 0 0.0829 0.0647 -0.1247 C 0 0 0 0 0 0 0 0 0 0 0 0 1.1495 -0.7790 0.2290 C 0 0 0 0 0 0 0 0 0 0 0 0 2.4888 -0.4240 0.0538 C 0 0 0 0 0 0 0 0 0 0 0 0 3.4700 -1.3421 0.4384 N 0 0 0 0 0 0 0 0 0 0 0 0 4.8411 -0.9132 0.2299 C 0 0 0 0 0 0 0 0 0 0 0 0 5.7631 -2.0150 0.6835 C 0 0 0 0 0 0 0 0 0 0 0 0 7.1900 -1.5825 0.4692 C 0 0 0 0 0 0 0 0 0 0 0 0 8.0600 -2.6551 0.9105 N 0 0 0 0 0 0 0 0 0 0 0 0 2.7630 0.8243 -0.4944 C 0 0 0 0 0 0 0 0 0 0 0 0 1.7240 1.6822 -0.8495 C 0 0 0 0 0 0 0 0 0 0 0 0 0.3759 1.3238 -0.6725 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.6816 2.1848 -1.0165 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.4586 3.4634 -1.5562 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.5121 4.3119 -1.8867 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.8222 3.8984 -1.6826 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.8967 4.7410 -2.0080 N 0 0 0 0 0 0 0 0 0 0 0 0 -3.0617 2.6333 -1.1501 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.0131 1.7640 -0.8143 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 2 0 4 5 1 0 5 6 2 0 6 7 1 0 7 8 2 0 8 9 1 0 9 10 2 0 4 11 1 0 11 12 2 0 12 13 1 0 13 14 1 0 14 15 1 0 15 16 1 0 16 17 1 0 17 18 1 0 13 19 2 0 19 20 1 0 20 21 2 0 21 22 1 0 22 23 2 0 23 24 1 0 24 25 2 0 25 26 1 0 25 27 1 0 27 28 2 0 28 3 1 0 10 5 1 0 21 11 1 0 28 22 1 0 M CHG 1 3 1 M END $$$$

Assays:

Name	Assay stage	Target	Activity
Single dose inhibition of SARS-CoV-2 cytopathic effect in VeroE6	primary assay	Organism Severe acute respiratory syndrome-related coronavirus	active
Dose-dependent inhibition of SARS-CoV-2 cytopathic effect in VeroE6	confirmatory assay	Organism Severe acute respiratory syndrome-related coronavirus	inactive
Single dose inhibition of SARS-CoV-2 3CL-Pro	primary assay	Replicase polyprotein 1ab	inactive

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