EOS101670

Name: cytidine
EOS: EOS101670 
CAS: 4395-95-3
65-46-3
Synonyms: cytidine
Tags:
Compound Library: Bioactive Compound Library
ECBL Pilot Compounds
Molecule image

Basic Properties:

Formula: C9H13N3O5
Molecular Weight: 243.22
Rotatable Bond Donors: 2
clogP: -2.56
Topological Polar Surface Area: 130.83
Lipinski's RO5:  MW: 243.22  HBA: 8  HBD: 5  RB: 2  LogP: -2.56
Rule of Three:  MW: 243.22  HBA: 8  HBD: 5  RB: 2  LogP: -2.56

Additional Data:

Other Descriptors

FP3 Fingerprint: 0.56
NHs/OHs: 5
Nitrogens and Oxygens: 8
Aliphatic Carbocycles: 0
Aliphatic Heterocycles: 1
Aliphatic Rings: 1
Aromatic Carbocycles: 0
Aromatic Heterocycles: 1
Aromatic Rings: 1
Heteroatoms: 8
Radical Electrons: 0
Saturated Carbocycles: 0
Saturated Heterocycles: 1
Saturated Rings: 1
Valence Electrons: 94
Rings: 2
Aliphatic Carboxylic Acids: 0
Aliphatic Hydroxyl Groups: 3
Aliphatic Hydroxyl Groups Excluding Tert-OH: 3
Nitrogen Functional Groups Attached to Aromatics: 1
Aromatic Carboxylic Acide: 0
Aromatic Nitrogens: 2
Aromatic Amines: 0
Aromatic Hydroxyl Groups: 0
Carboxylic Acids (COO): 0
Carboxylic Acids (COO2): 0
Carbonyl Oxygens: 0
Carbonyl Oxygens, excluding COOH: 0
Thiocarbonyls: 0
C(OH)CCN-Ctert-alkyls/C(OH)CCNcyclics: 0
Imines: 0
Tertiary Amines: 2
Secondary Amines: 0
Primary Amines: 1
Hydroxylamine Groups: 0
XCCNR Groups: 0
Tert-alicyclic Amines (no heteroatoms, not quinine-like bridged N): 0
H-pyrrole nitrogens: 0
Thiol groups: 0
Aldehydes: 0
Alkyl Carbamates (subject to hydrolysis): 0
Alkyl Halides: 0
Allylic Oxidation Sites excluding Steroid Dienone: 0
Amides: 0
Amidine Groups: 0
Anilines: 1
Aryl Methyl Sites for Hydroxylation: 0
Azide Groups: 0
Azo Groups: 0
Barbiturate Groups: 0
Benzene Rings: 0
Benzodiazepines with no additional Fused Rings: 0
Bicyclic: 0
Diazo Groups: 0
Dihydropyridines: 0
Epoxide Rings: 0
Esters: 0
Ether Oxygens (including phenoxy): 1
Furan Rings: 0
Guanidine Groups: 0
Halogens: 0
Hydrazine Groups: 0
Hydrazone Groups: 0
Imidazole Rings: 0
Imide Groups: 0
Isocyanates: 0
Isothiocyanates: 0
Ketones: 0
Ketones excluding diaryl, a,b-unsat. dienones, heteroatom on Calpha: 0
Beta Lactams: 0
Cyclic Esters (Lactones): 0
Methoxy Groups -OCH3: 0
Morpholine Rings: 0
Nitriles: 0
Nitro Groups: 0
Nitro Benzene Ring Substituents: 0
Non-ortho Nitro Benzene Ring Substituents: 0
Nitroso Groups, excluding NO2: 0
Oxazole Rings: 0
Oxime Groups: 0
Para-hydroxylation Sites: 0
Phenols: 0
Phenolic OH excluding Ortho Intramolecular Hbond substituents: 0
Phosphoric Acid Groups: 0
Phosphoric Ester Groups: 0
Piperdine Rings: 0
Piperzine Rings: 0
Primary Amides: 0
Primary Sulfonamides: 0
Pyridine Rings: 0
Guarternary Nitrogens: 0
Thioethers: 0
Sulfonamides: 0
Sulfone Groups: 0
Terminal Acetylenes: 0
Tetrazole Rings: 0
Thiazole Rings: 0
Thiocyanates: 0
Thiophene Rings: 0
Unbranched Alkanes of at least 4 members (excludes halogenated alkanes): 0
Urea Groups: 0
BCUT2D - Gasteiger Charge Eigenvalue High: 2.43
BCUT2D - Gasteiger Charge Eigenvalue Low: -2.16
BCUT2D - Crippen Lowgp Eigenvalue High: 2.27
BCUT2D - Crippen Lowgp Eigenvalue Low: -2.36
BCUT2D - Crippen MR Eigenvalue High: 5.23
BCUT2D - Crippen MR Eigenvalue Low: -0.05
BCUT2D - Mass Eigenvalue High: 16.56
BCUT2D - Mass Eigenvalue Low: 10.13
Balaban’s J: 2.32
Bertz CT: 462.19
Chi 0: 12.58
Chi 0n: 8.80
Chi 0v: 8.80
Chi 1: 8.04
Chi 1n: 5.01
Chi 1v: 5.01
Chi 2n: 3.77
Chi 2v: 3.77
Chi 3v: 2.64
Chi 3v: 2.64
Chi 4n: 1.73
Chi 4v: 1.73
Morgan Fingerprint Density (1): 1.47
Morgan Fingerprint Density (2): 2.18
Morgan Fingerprint Density (3): 2.71
CSP3 Fraction: 0.56
Hall Kier Alpha: -1.48
Heavy Atoms: 17.00
Ipc descriptor: 7816.79
Kappa 1: 11.99
Kappa 2: 4.41
Kappa 3: 2.03
Labute ASA: 95.90
Max ABS Estate Index: 11.51
Max ABS Partial Charge: 0.39
Max Estate Index: 11.51
Max Partial Charge: 0.35
Minimal ABS Estate Index: 0.05
Minimal ABS Partial Charge: 0.35
Minimal State Index: -1.31
Minimal Partial Charge: -0.39
Molar Refractivity: 55.92
Quantitative Estimation of Drug-likeness (QED): 0.45

Structure formats:

Smiles


InChI


SDF


Similar ECBD compounds (0 entries):

ECBD ID Similarity Structure

Similar ZINC compounds (109 entries):

ZINC ID Similarity Structure
ZINC3978018 1.0 Zinc molecule image
ZINC2522524 0.75 Zinc molecule image
ZINC12336757 1.0 Zinc molecule image
ZINC17174523 0.71 Zinc molecule image
ZINC895248 1.0 Zinc molecule image
ZINC34085615 0.75 Zinc molecule image
ZINC2583632 1.0 Zinc molecule image
ZINC3795098 1.0 Zinc molecule image
ZINC16969357 1.0 Zinc molecule image
ZINC17174506 0.75 Zinc molecule image
ZINC12336758 1.0 Zinc molecule image
ZINC13813289 0.7 Zinc molecule image
ZINC59201305 0.75 Zinc molecule image
ZINC22067498 0.7 Zinc molecule image
ZINC3817231 0.75 Zinc molecule image
ZINC6234828 1.0 Zinc molecule image
ZINC1078621 1.0 Zinc molecule image
ZINC6091575 1.0 Zinc molecule image
ZINC6119090 0.7 Zinc molecule image
ZINC5784287 0.71 Zinc molecule image
ZINC13546396 0.75 Zinc molecule image
ZINC2047150 0.7 Zinc molecule image
ZINC6599341 0.7 Zinc molecule image
ZINC3830624 1.0 Zinc molecule image
ZINC3830625 1.0 Zinc molecule image
ZINC1568870 0.7 Zinc molecule image
ZINC6599342 0.7 Zinc molecule image
ZINC6524890 0.78 Zinc molecule image
ZINC57331 0.75 Zinc molecule image
ZINC13813286 0.7 Zinc molecule image
ZINC5758598 0.75 Zinc molecule image
ZINC6524892 1.0 Zinc molecule image
ZINC3830626 1.0 Zinc molecule image
ZINC3830623 1.0 Zinc molecule image
ZINC17174505 0.75 Zinc molecule image
ZINC5758597 0.75 Zinc molecule image
ZINC6599340 0.7 Zinc molecule image
ZINC4556822 0.72 Zinc molecule image
ZINC35635704 0.72 Zinc molecule image
ZINC82211854 0.79 Zinc molecule image
ZINC4534019 0.73 Zinc molecule image
ZINC5197113 0.73 Zinc molecule image
ZINC14953681 0.72 Zinc molecule image
ZINC257373216 0.72 Zinc molecule image
ZINC5996572 0.77 Zinc molecule image
ZINC5998209 0.72 Zinc molecule image
ZINC16546003 0.79 Zinc molecule image
ZINC4556825 0.72 Zinc molecule image
ZINC4321512 0.73 Zinc molecule image
ZINC1042107 0.73 Zinc molecule image
ZINC4534020 0.73 Zinc molecule image
ZINC13517352 0.75 Zinc molecule image
ZINC21999919 0.73 Zinc molecule image
ZINC4534018 0.73 Zinc molecule image
ZINC82211851 0.79 Zinc molecule image
ZINC3991136 0.77 Zinc molecule image
ZINC13516196 0.75 Zinc molecule image
ZINC13550076 0.73 Zinc molecule image
ZINC5496496 0.71 Zinc molecule image
ZINC16940306 0.71 Zinc molecule image
ZINC6119050 0.79 Zinc molecule image
ZINC4534021 0.73 Zinc molecule image
ZINC5496494 0.71 Zinc molecule image
ZINC1078602 0.73 Zinc molecule image
ZINC584578738 0.79 Zinc molecule image
ZINC5461123 0.77 Zinc molecule image
ZINC5496498 0.71 Zinc molecule image
ZINC4556823 0.72 Zinc molecule image
ZINC38599713 0.72 Zinc molecule image
ZINC13546402 0.72 Zinc molecule image
ZINC5811562 0.72 Zinc molecule image
ZINC5461118 0.77 Zinc molecule image
ZINC5811561 0.72 Zinc molecule image
ZINC5461115 0.77 Zinc molecule image
ZINC5461116 0.77 Zinc molecule image
ZINC5573660 0.74 Zinc molecule image
ZINC5496495 0.71 Zinc molecule image
ZINC5573667 0.74 Zinc molecule image
ZINC5573665 0.74 Zinc molecule image
ZINC5573662 0.74 Zinc molecule image
ZINC4556824 0.72 Zinc molecule image
ZINC3806784 0.72 Zinc molecule image
ZINC4096919 0.71 Zinc molecule image
ZINC3861744 0.76 Zinc molecule image
ZINC1785780 0.76 Zinc molecule image
ZINC9007749 0.76 Zinc molecule image
ZINC78106263 0.71 Zinc molecule image
ZINC16546001 0.76 Zinc molecule image
ZINC78106261 0.71 Zinc molecule image
ZINC8613159 0.76 Zinc molecule image
ZINC16928638 0.71 Zinc molecule image
ZINC3954230 0.76 Zinc molecule image
ZINC1532524 0.76 Zinc molecule image
ZINC4535606 0.71 Zinc molecule image
ZINC1736046 0.71 Zinc molecule image
ZINC3869483 0.76 Zinc molecule image
ZINC3869482 0.76 Zinc molecule image
ZINC1530282 0.71 Zinc molecule image
ZINC3869480 0.76 Zinc molecule image
ZINC61947659 0.76 Zinc molecule image
ZINC4535605 0.71 Zinc molecule image
ZINC1785781 0.76 Zinc molecule image
ZINC3869481 0.76 Zinc molecule image
ZINC4535613 0.71 Zinc molecule image
ZINC8952080 0.76 Zinc molecule image
ZINC257358648 0.7 Zinc molecule image
ZINC101361617 0.7 Zinc molecule image
ZINC257358649 0.7 Zinc molecule image
ZINC215977438 0.7 Zinc molecule image

Assays: