EOS101389

Name:	MK-5108
EOS:	EOS101389
CAS:	1010085-13-8
Synonyms:	MK-5108
Tags:	chemical probe
Compound Library:	Bioactive Compound Library ECBL Pilot Compounds

Basic Properties:

Formula:	C22H21ClFN3O3S
Molecular Weight:	461.95
Rotatable Bond Donors:	7
clogP:	5.71
Topological Polar Surface Area:	84.34
Lipinski's RO5:	MW: 461.95 HBA: 6 HBD: 2 RB: 7 LogP: 5.71
Rule of Three:	MW: 461.95 HBA: 6 HBD: 2 RB: 7 LogP: 5.71

Additional Data:

Other Descriptors

Search:

Feature	Value
FP3 Fingerprint:	0.32
NHs/OHs:	2
Nitrogens and Oxygens:	6
Aliphatic Carbocycles:	1
Aliphatic Heterocycles:	0
Aliphatic Rings:	1
Aromatic Carbocycles:	1
Aromatic Heterocycles:	2
Aromatic Rings:	3
Heteroatoms:	9
Radical Electrons:	0
Saturated Carbocycles:	1
Saturated Heterocycles:	0
Saturated Rings:	1
Valence Electrons:	162
Rings:	4
Aliphatic Carboxylic Acids:	1
Aliphatic Hydroxyl Groups:	0
Aliphatic Hydroxyl Groups Excluding Tert-OH:	0
Nitrogen Functional Groups Attached to Aromatics:	0
Aromatic Carboxylic Acide:	0
Aromatic Nitrogens:	2
Aromatic Amines:	0
Aromatic Hydroxyl Groups:	0
Carboxylic Acids (COO):	1
Carboxylic Acids (COO2):	1
Carbonyl Oxygens:	1
Carbonyl Oxygens, excluding COOH:	0
Thiocarbonyls:	0
C(OH)CCN-Ctert-alkyls/C(OH)CCNcyclics:	0
Imines:	0
Tertiary Amines:	2
Secondary Amines:	1
Primary Amines:	0
Hydroxylamine Groups:	0
XCCNR Groups:	0
Tert-alicyclic Amines (no heteroatoms, not quinine-like bridged N):	0
H-pyrrole nitrogens:	0
Thiol groups:	0
Aldehydes:	0
Alkyl Carbamates (subject to hydrolysis):	0
Alkyl Halides:	0
Allylic Oxidation Sites excluding Steroid Dienone:	0
Amides:	0
Amidine Groups:	0
Anilines:	2
Aryl Methyl Sites for Hydroxylation:	0
Azide Groups:	0
Azo Groups:	0
Barbiturate Groups:	0
Benzene Rings:	1
Benzodiazepines with no additional Fused Rings:	0
Bicyclic:	0
Diazo Groups:	0
Dihydropyridines:	0
Epoxide Rings:	0
Esters:	0
Ether Oxygens (including phenoxy):	1
Furan Rings:	0
Guanidine Groups:	0
Halogens:	2
Hydrazine Groups:	0
Hydrazone Groups:	0
Imidazole Rings:	0
Imide Groups:	0
Isocyanates:	0
Isothiocyanates:	0
Ketones:	0
Ketones excluding diaryl, a,b-unsat. dienones, heteroatom on Calpha:	0
Beta Lactams:	0
Cyclic Esters (Lactones):	0
Methoxy Groups -OCH3:	0
Morpholine Rings:	0
Nitriles:	0
Nitro Groups:	0
Nitro Benzene Ring Substituents:	0
Non-ortho Nitro Benzene Ring Substituents:	0
Nitroso Groups, excluding NO2:	0
Oxazole Rings:	0
Oxime Groups:	0
Para-hydroxylation Sites:	0
Phenols:	0
Phenolic OH excluding Ortho Intramolecular Hbond substituents:	0
Phosphoric Acid Groups:	0
Phosphoric Ester Groups:	0
Piperdine Rings:	0
Piperzine Rings:	0
Primary Amides:	0
Primary Sulfonamides:	0
Pyridine Rings:	1
Guarternary Nitrogens:	0
Thioethers:	0
Sulfonamides:	0
Sulfone Groups:	0
Terminal Acetylenes:	0
Tetrazole Rings:	0
Thiazole Rings:	1
Thiocyanates:	0
Thiophene Rings:	0
Unbranched Alkanes of at least 4 members (excludes halogenated alkanes):	0
Urea Groups:	0
BCUT2D - Gasteiger Charge Eigenvalue High:	2.43
BCUT2D - Gasteiger Charge Eigenvalue Low:	-2.36
BCUT2D - Crippen Lowgp Eigenvalue High:	2.41
BCUT2D - Crippen Lowgp Eigenvalue Low:	-2.40
BCUT2D - Crippen MR Eigenvalue High:	7.13
BCUT2D - Crippen MR Eigenvalue Low:	-0.15
BCUT2D - Mass Eigenvalue High:	35.50
BCUT2D - Mass Eigenvalue Low:	9.70
Balaban’s J:	1.43
Bertz CT:	1055.91
Chi 0:	21.85
Chi 0n:	16.55
Chi 0v:	18.13
Chi 1:	14.95
Chi 1n:	9.92
Chi 1v:	11.17
Chi 2n:	7.61
Chi 2v:	8.91
Chi 3v:	5.55
Chi 3v:	6.53
Chi 4n:	3.87
Chi 4v:	4.57
Morgan Fingerprint Density (1):	1.29
Morgan Fingerprint Density (2):	2.06
Morgan Fingerprint Density (3):	2.77
CSP3 Fraction:	0.32
Hall Kier Alpha:	-2.71
Heavy Atoms:	31.00
Ipc descriptor:	13945519.00
Kappa 1:	21.52
Kappa 2:	9.20
Kappa 3:	4.97
Labute ASA:	187.63
Max ABS Estate Index:	14.13
Max ABS Partial Charge:	0.49
Max Estate Index:	14.13
Max Partial Charge:	0.31
Minimal ABS Estate Index:	0.01
Minimal ABS Partial Charge:	0.31
Minimal State Index:	-0.93
Minimal Partial Charge:	-0.49
Molar Refractivity:	117.70
Quantitative Estimation of Drug-likeness (QED):	0.47

External Databases

Search:

DB
PubChem TPS (50082338)
PDB (5VC)
IBM NIH (850FEEED76916B8AEE35A99C99385A1E)
ChemicalBook (CB62570376)
ChEMBL (CHEMBL3600873)
DrugBank (DB12556)
FDA SRS (H8J407531S)
Nikkaji (J3.596.755I)
LINCS (LSM-36812)
Selleck (mk-5108-vx-689)
MolPort (MolPort-023-219-118)
SureChEMBL (SCHEMBL1501371)

Structure formats:

Smiles

InChI

SDF

EOS101389
     RDKit          3D

31 34  0  0  0  0  0  0  0  0999 V2000
    0.3712   -3.4201   -0.3279 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2601   -2.8356   -1.1963 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6793   -3.4338   -2.3415 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6922   -1.3823   -1.1389 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.2176   -1.3533   -1.0576 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8223   -1.8616    0.2118 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3483   -3.1416    0.2533 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8996   -3.5773    1.4491 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9188   -2.7286    2.5505 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3941   -1.4439    2.4296 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3986   -0.6428    3.5987 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3688    0.7161    3.5415 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9182    1.4862    2.6179 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6942    2.8121    2.9103 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9927    3.0518    4.0615 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6091    1.5920    4.8359 S   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8379   -1.0161    1.2673 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3077   -0.6731   -2.4317 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1114   -0.1537   -2.5264 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9968   -0.5556   -1.3742 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.3389   -0.1208   -1.4914 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5827    1.2224   -1.3889 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6057    2.1769   -1.1080 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9364    3.5276   -1.0161 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2533    3.9357   -1.2069 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2359    2.9917   -1.4910 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8515    3.5287   -1.7305 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    4.9023    1.6421   -1.5802 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8512    0.7343   -1.8637 F   0  0  0  0  0  0  0  0  0  0  0  0
    1.4075   -0.4151    0.0066 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0853   -0.6621    0.0579 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  2  4  1  0
  4  5  1  1
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 10 17  2  0
  4 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  1
 21 22  1  0
 22 23  2  0
 23 24  1  0
 24 25  2  0
 25 26  1  0
 26 27  1  0
 26 28  2  0
 28 29  1  0
 20 30  1  0
 30 31  1  0
 31  4  1  0
 17  6  1  0
 28 22  1  0
 16 12  1  0
M  END

$$$$

Similar ECBD compounds (0 entries):

Search:

	ECBD ID	Similarity	Structure	SDF
No data available in table

Similar ZINC compounds (3 entries):

Search:

ZINC ID	Similarity	SDF
ZINC252670601	1.0	ZINC252670601 RDKit 3D 31 34 0 0 0 0 0 0 0 0999 V2000 1.2337 -4.0524 -0.9187 O 0 0 0 0 0 0 0 0 0 0 0 0 0.9489 -3.0702 -0.2423 C 0 0 0 0 0 0 0 0 0 0 0 0 1.3696 -2.9014 1.0338 O 0 0 0 0 0 0 0 0 0 0 0 0 0.0313 -1.9609 -0.7160 C 0 0 2 0 0 0 0 0 0 0 0 0 0.5556 -1.4697 -2.0619 C 0 0 0 0 0 0 0 0 0 0 0 0 1.7728 -0.5983 -2.0494 C 0 0 0 0 0 0 0 0 0 0 0 0 1.9545 0.2816 -3.1027 C 0 0 0 0 0 0 0 0 0 0 0 0 3.0947 1.0693 -3.1002 C 0 0 0 0 0 0 0 0 0 0 0 0 4.0100 0.9551 -2.0610 C 0 0 0 0 0 0 0 0 0 0 0 0 3.7641 0.0581 -1.0232 C 0 0 0 0 0 0 0 0 0 0 0 0 4.6858 -0.1053 0.0330 N 0 0 0 0 0 0 0 0 0 0 0 0 5.6158 0.8161 0.4086 C 0 0 0 0 0 0 0 0 0 0 0 0 6.8735 0.5179 0.6813 N 0 0 0 0 0 0 0 0 0 0 0 0 7.5621 1.6433 1.0759 C 0 0 0 0 0 0 0 0 0 0 0 0 6.8233 2.7943 1.1314 C 0 0 0 0 0 0 0 0 0 0 0 0 5.2152 2.4898 0.6879 S 0 0 0 0 0 0 0 0 0 0 0 0 2.6519 -0.7222 -1.0257 N 0 0 0 0 0 0 0 0 0 0 0 0 -0.1081 -0.8329 0.3031 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.1929 0.1598 -0.0599 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.5258 -0.5408 -0.2245 C 0 0 1 0 0 0 0 0 0 0 0 0 -3.4789 0.4197 -0.6673 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.5301 0.5440 0.2029 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.6446 -0.1899 1.3843 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.7433 -0.0112 2.2227 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.7362 0.9047 1.8845 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.6282 1.6407 0.7081 C 0 0 0 0 0 0 0 0 0 0 0 0 -7.8710 2.7633 0.3199 Cl 0 0 0 0 0 0 0 0 0 0 0 0 -5.5296 1.4609 -0.1295 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.4255 2.1713 -1.2644 F 0 0 0 0 0 0 0 0 0 0 0 0 -2.4167 -1.6193 -1.2829 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.3318 -2.6151 -0.9265 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 2 0 2 3 1 0 2 4 1 0 4 5 1 6 5 6 1 0 6 7 2 0 7 8 1 0 8 9 2 0 9 10 1 0 10 11 1 0 11 12 1 0 12 13 2 0 13 14 1 0 14 15 2 0 15 16 1 0 10 17 2 0 4 18 1 0 18 19 1 0 19 20 1 0 20 21 1 6 21 22 1 0 22 23 2 0 23 24 1 0 24 25 2 0 25 26 1 0 26 27 1 0 26 28 2 0 28 29 1 0 20 30 1 0 30 31 1 0 31 4 1 0 17 6 1 0 28 22 1 0 16 12 1 0 M END $$$$
ZINC73069245	1.0	ZINC73069245 RDKit 3D 31 34 0 0 0 0 0 0 0 0999 V2000 -0.5508 1.8303 -2.0767 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.4811 2.1372 -0.8935 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.9893 3.2941 -0.3942 O 0 0 0 0 0 0 0 0 0 0 0 0 0.2548 1.3456 0.1707 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.5737 1.2393 1.4470 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.8056 0.3992 1.3514 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.8755 -0.7783 2.0748 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.0337 -1.5306 1.9673 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.0721 -1.0874 1.1562 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.9445 0.1116 0.4607 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.9642 0.6078 -0.3747 N 0 0 0 0 0 0 0 0 0 0 0 0 -6.1662 0.0167 -0.6066 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.6271 -1.1094 -0.0922 N 0 0 0 0 0 0 0 0 0 0 0 0 -7.8897 -1.3758 -0.5749 C 0 0 0 0 0 0 0 0 0 0 0 0 -8.3903 -0.4525 -1.4526 C 0 0 0 0 0 0 0 0 0 0 0 0 -7.2711 0.7970 -1.7011 S 0 0 0 0 0 0 0 0 0 0 0 0 -2.8094 0.8538 0.5666 N 0 0 0 0 0 0 0 0 0 0 0 0 0.6063 -0.0307 -0.3893 C 0 0 0 0 0 0 0 0 0 0 0 0 1.5981 -0.7896 0.4714 C 0 0 0 0 0 0 0 0 0 0 0 0 2.8658 0.0065 0.7184 C 0 0 0 0 0 0 0 0 0 0 0 0 3.5261 0.2308 -0.5225 O 0 0 0 0 0 0 0 0 0 0 0 0 4.7608 -0.3547 -0.6031 C 0 0 0 0 0 0 0 0 0 0 0 0 5.4009 -0.1725 -1.8313 C 0 0 0 0 0 0 0 0 0 0 0 0 6.6651 -0.7092 -2.0663 C 0 0 0 0 0 0 0 0 0 0 0 0 7.3052 -1.4366 -1.0687 C 0 0 0 0 0 0 0 0 0 0 0 0 6.6779 -1.6228 0.1592 C 0 0 0 0 0 0 0 0 0 0 0 0 7.4974 -2.5250 1.3730 Cl 0 0 0 0 0 0 0 0 0 0 0 0 5.4114 -1.0854 0.3948 C 0 0 0 0 0 0 0 0 0 0 0 0 4.8331 -1.2791 1.5914 F 0 0 0 0 0 0 0 0 0 0 0 0 2.5099 1.3459 1.3351 C 0 0 0 0 0 0 0 0 0 0 0 0 1.5317 2.1239 0.4754 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 2 0 2 3 1 0 2 4 1 0 4 5 1 0 5 6 1 0 6 7 2 0 7 8 1 0 8 9 2 0 9 10 1 0 10 11 1 0 11 12 1 0 12 13 2 0 13 14 1 0 14 15 2 0 15 16 1 0 10 17 2 0 4 18 1 0 18 19 1 0 19 20 1 0 20 21 1 0 21 22 1 0 22 23 2 0 23 24 1 0 24 25 2 0 25 26 1 0 26 27 1 0 26 28 2 0 28 29 1 0 20 30 1 0 30 31 1 0 31 4 1 0 17 6 1 0 28 22 1 0 16 12 1 0 M END $$$$
ZINC1560411623	0.78	ZINC1560411623 RDKit 3D 31 34 0 0 0 0 0 0 0 0999 V2000 -0.6823 3.0401 1.1110 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.1955 2.1035 0.4872 C 0 0 0 0 0 0 0 0 0 0 0 0 0.7053 2.2667 -0.5102 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.5630 0.6510 0.7291 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.0328 0.2699 2.1059 C 0 0 0 0 0 0 0 0 0 0 0 0 1.4255 -0.0444 2.2046 C 0 0 0 0 0 0 0 0 0 0 0 0 1.8107 -1.1868 2.8840 C 0 0 0 0 0 0 0 0 0 0 0 0 3.1669 -1.4522 2.9819 C 0 0 0 0 0 0 0 0 0 0 0 0 4.0843 -0.5779 2.4110 C 0 0 0 0 0 0 0 0 0 0 0 0 3.6351 0.5578 1.7436 C 0 0 0 0 0 0 0 0 0 0 0 0 4.5193 1.4781 1.1475 N 0 0 0 0 0 0 0 0 0 0 0 0 5.8752 1.3829 1.1228 C 0 0 0 0 0 0 0 0 0 0 0 0 6.6279 0.4183 1.6204 N 0 0 0 0 0 0 0 0 0 0 0 0 7.9606 0.6844 1.3940 C 0 0 0 0 0 0 0 0 0 0 0 0 8.2216 1.8482 0.7224 C 0 0 0 0 0 0 0 0 0 0 0 0 6.7770 2.6547 0.3505 S 0 0 0 0 0 0 0 0 0 0 0 0 2.3039 0.8199 1.6439 N 0 0 0 0 0 0 0 0 0 0 0 0 -0.0525 -0.3187 -0.3352 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.7343 -0.1822 -1.6829 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.2111 -0.1697 -1.5264 C 0 0 0 0 0 3 0 0 0 0 0 0 -2.8663 -1.3471 -1.8264 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.1893 -1.2807 -2.1924 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.7483 -0.1614 -2.8110 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.0871 -0.1697 -3.1971 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.8683 -1.3022 -2.9797 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.3086 -2.4263 -2.3785 C 0 0 0 0 0 0 0 0 0 0 0 0 -7.2984 -3.8097 -2.1311 Cl 0 0 0 0 0 0 0 0 0 0 0 0 -4.9711 -2.4176 -1.9904 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.4276 -3.5017 -1.4140 F 0 0 0 0 0 0 0 0 0 0 0 0 -2.7908 0.7471 -0.5064 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.0860 0.5570 0.8219 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 2 0 2 3 1 0 2 4 1 0 4 5 1 0 5 6 1 0 6 7 2 0 7 8 1 0 8 9 2 0 9 10 1 0 10 11 1 0 11 12 1 0 12 13 2 0 13 14 1 0 14 15 2 0 15 16 1 0 10 17 2 0 4 18 1 0 18 19 1 0 19 20 1 0 20 21 1 0 21 22 1 0 22 23 2 0 23 24 1 0 24 25 2 0 25 26 1 0 26 27 1 0 26 28 2 0 28 29 1 0 20 30 1 0 30 31 1 0 31 4 1 0 17 6 1 0 28 22 1 0 16 12 1 0 M RAD 1 20 2 M END $$$$

Assays:

Name	Assay stage	Target	Activity
Single dose inhibition of SARS-CoV-2 cytopathic effect in VeroE6	primary assay	Organism Severe acute respiratory syndrome-related coronavirus	inactive
Single dose inhibition of SARS-CoV-2 3CL-Pro	primary assay	Replicase polyprotein 1ab	inactive

Sections:

EOS101389

Basic Properties:

Additional Data:

Other Descriptors

External Databases

Structure formats:

Smiles

InChI

SDF

Similar ECBD compounds (0 entries):

Similar ZINC compounds (3 entries):

Assays: