EOS101180

Name:	AGOMELATINE
EOS:	EOS101180
CAS:	138112-76-2 1176316-99-6
Synonyms:	AGOMELATINE
Tags:	approved drug
Compound Library:	Bioactive Compound Library ECBL Pilot Compounds

Basic Properties:

Formula:	C15H17NO2
Molecular Weight:	243.31
Rotatable Bond Donors:	4
clogP:	2.53
Topological Polar Surface Area:	38.33
Lipinski's RO5:	MW: 243.31 HBA: 3 HBD: 1 RB: 4 LogP: 2.53
Rule of Three:	MW: 243.31 HBA: 3 HBD: 1 RB: 4 LogP: 2.53

Additional Data:

Other Descriptors

Feature	Value
FP3 Fingerprint:	0.27
NHs/OHs:	1
Nitrogens and Oxygens:	3
Aliphatic Carbocycles:	0
Aliphatic Heterocycles:	0
Aliphatic Rings:	0
Aromatic Carbocycles:	2
Aromatic Heterocycles:	0
Aromatic Rings:	2
Heteroatoms:	3
Radical Electrons:	0
Saturated Carbocycles:	0
Saturated Heterocycles:	0
Saturated Rings:	0
Valence Electrons:	94
Rings:	2
Aliphatic Carboxylic Acids:	0
Aliphatic Hydroxyl Groups:	0
Aliphatic Hydroxyl Groups Excluding Tert-OH:	0
Nitrogen Functional Groups Attached to Aromatics:	0
Aromatic Carboxylic Acide:	0
Aromatic Nitrogens:	0
Aromatic Amines:	0
Aromatic Hydroxyl Groups:	0
Carboxylic Acids (COO):	0
Carboxylic Acids (COO2):	0
Carbonyl Oxygens:	1
Carbonyl Oxygens, excluding COOH:	1
Thiocarbonyls:	0
C(OH)CCN-Ctert-alkyls/C(OH)CCNcyclics:	0
Imines:	0
Tertiary Amines:	0
Secondary Amines:	1
Primary Amines:	0
Hydroxylamine Groups:	0
XCCNR Groups:	0
Tert-alicyclic Amines (no heteroatoms, not quinine-like bridged N):	0
H-pyrrole nitrogens:	0
Thiol groups:	0
Aldehydes:	0
Alkyl Carbamates (subject to hydrolysis):	0
Alkyl Halides:	0
Allylic Oxidation Sites excluding Steroid Dienone:	0
Amides:	1
Amidine Groups:	0
Anilines:	0
Aryl Methyl Sites for Hydroxylation:	0
Azide Groups:	0
Azo Groups:	0
Barbiturate Groups:	0
Benzene Rings:	2
Benzodiazepines with no additional Fused Rings:	0
Bicyclic:	1
Diazo Groups:	0
Dihydropyridines:	0
Epoxide Rings:	0
Esters:	0
Ether Oxygens (including phenoxy):	1
Furan Rings:	0
Guanidine Groups:	0
Halogens:	0
Hydrazine Groups:	0
Hydrazone Groups:	0
Imidazole Rings:	0
Imide Groups:	0
Isocyanates:	0
Isothiocyanates:	0
Ketones:	0
Ketones excluding diaryl, a,b-unsat. dienones, heteroatom on Calpha:	0
Beta Lactams:	0
Cyclic Esters (Lactones):	0
Methoxy Groups -OCH3:	1
Morpholine Rings:	0
Nitriles:	0
Nitro Groups:	0
Nitro Benzene Ring Substituents:	0
Non-ortho Nitro Benzene Ring Substituents:	0
Nitroso Groups, excluding NO2:	0
Oxazole Rings:	0
Oxime Groups:	0
Para-hydroxylation Sites:	0
Phenols:	0
Phenolic OH excluding Ortho Intramolecular Hbond substituents:	0
Phosphoric Acid Groups:	0
Phosphoric Ester Groups:	0
Piperdine Rings:	0
Piperzine Rings:	0
Primary Amides:	0
Primary Sulfonamides:	0
Pyridine Rings:	0
Guarternary Nitrogens:	0
Thioethers:	0
Sulfonamides:	0
Sulfone Groups:	0
Terminal Acetylenes:	0
Tetrazole Rings:	0
Thiazole Rings:	0
Thiocyanates:	0
Thiophene Rings:	0
Unbranched Alkanes of at least 4 members (excludes halogenated alkanes):	0
Urea Groups:	0
BCUT2D - Gasteiger Charge Eigenvalue High:	2.03
BCUT2D - Gasteiger Charge Eigenvalue Low:	-2.08
BCUT2D - Crippen Lowgp Eigenvalue High:	2.24
BCUT2D - Crippen Lowgp Eigenvalue Low:	-2.22
BCUT2D - Crippen MR Eigenvalue High:	5.87
BCUT2D - Crippen MR Eigenvalue Low:	-0.12
BCUT2D - Mass Eigenvalue High:	16.47
BCUT2D - Mass Eigenvalue Low:	10.02
Balaban’s J:	2.28
Bertz CT:	563.42
Chi 0:	12.96
Chi 0n:	10.69
Chi 0v:	10.69
Chi 1:	8.70
Chi 1n:	6.01
Chi 1v:	6.01
Chi 2n:	4.24
Chi 2v:	4.24
Chi 3v:	2.95
Chi 3v:	2.95
Chi 4n:	2.03
Chi 4v:	2.03
Morgan Fingerprint Density (1):	1.28
Morgan Fingerprint Density (2):	2.11
Morgan Fingerprint Density (3):	2.83
CSP3 Fraction:	0.27
Hall Kier Alpha:	-2.03
Heavy Atoms:	18.00
Ipc descriptor:	13760.38
Kappa 1:	12.43
Kappa 2:	5.54
Kappa 3:	2.80
Labute ASA:	106.76
Max ABS Estate Index:	10.87
Max ABS Partial Charge:	0.50
Max Estate Index:	10.87
Max Partial Charge:	0.22
Minimal ABS Estate Index:	0.01
Minimal ABS Partial Charge:	0.22
Minimal State Index:	0.01
Minimal Partial Charge:	-0.50
Molar Refractivity:	72.89
Quantitative Estimation of Drug-likeness (QED):	0.90

External Databases

DB
PubChem DOTF (12014766)
ChEBI (134990)
FDA SRS (137R1N49AD)
ACToR (138112-76-2)
PubChem TPS (15121987)
GtoPdb (198)
BindingDB (50035179)
eMolecules (6843821)
PubChem (82148)
DrugCentral (99)
IBM NIH (A4C9D9B47D79F08CE01B8AECB6B806E4)
Selleck (Agomelatine)
PDB (AWY)
ChemicalBook (CB8500647)
ChEMBL (CHEMBL10878)
DrugBank (DB06594)
CompTox (DTXSID3057642)
HMDB (HMDB0015636)
Nikkaji (J481.046E)
LINCS (LSM-45989)
Mcule (MCULE-3838308303)
MolPort (MolPort-047-155-582)
PharmGKB (PA165958363)
SureChEMBL (SCHEMBL114476)
ZINC (ZINC000000005608)

Structure formats:

Smiles

InChI

SDF

EOS101180
     RDKit          3D

18 19  0  0  0  0  0  0  0  0999 V2000
   -2.0144   -1.1840   -2.9404 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0175   -1.2515   -1.9337 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5959   -0.6703   -0.7704 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4971   -0.6975    0.2901 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1552   -0.1302    1.5153 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9094    0.4701    1.6916 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5844    1.0350    2.9234 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3473    1.6424    3.1146 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5731    1.6860    2.0720 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2696    1.1183    0.8315 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2923    1.2082   -0.2562 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2084    0.0060   -0.2215 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1128    0.0423   -1.3385 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.0111   -0.9832   -1.5094 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8689   -0.7651   -2.7138 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1152   -1.9640   -0.7831 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9816    0.5074    0.6266 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3486   -0.0698   -0.5982 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 14 16  2  0
 10 17  1  0
 17 18  2  0
 18  3  1  0
 17  6  1  0
M  END

$$$$

Similar ECBD compounds (0 entries):

	ECBD ID	Similarity	Structure	SDF

Similar ZINC compounds (7 entries):

ZINC ID	Similarity	SDF
ZINC34477934	0.7	ZINC34477934 RDKit 3D 16 17 0 0 0 0 0 0 0 0999 V2000 2.4791 -1.7880 2.1887 C 0 0 0 0 0 0 0 0 0 0 0 0 2.9162 -0.4526 1.9576 O 0 0 0 0 0 0 0 0 0 0 0 0 2.0671 0.2027 1.1099 C 0 0 0 0 0 0 0 0 0 0 0 0 2.3177 1.5571 0.9108 C 0 0 0 0 0 0 0 0 0 0 0 0 1.4951 2.3052 0.0717 C 0 0 0 0 0 0 0 0 0 0 0 0 0.4173 1.7055 -0.5790 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.3982 2.4696 -1.4117 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.4751 1.8851 -2.0710 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.7405 0.5298 -1.9015 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.9382 -0.2536 -1.0671 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.2641 -1.7127 -0.9455 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.0629 -2.0434 0.2836 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.4160 -1.9538 0.0534 N 0 0 0 0 0 0 0 0 0 0 0 0 -1.5494 -2.3782 1.3469 O 0 0 0 0 0 0 0 0 0 0 0 0 0.1541 0.3294 -0.3974 C 0 0 0 0 0 0 0 0 0 0 0 0 0.9975 -0.4023 0.4505 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 2 0 4 5 1 0 5 6 2 0 6 7 1 0 7 8 2 0 8 9 1 0 9 10 2 0 10 11 1 0 11 12 1 0 12 13 1 0 12 14 2 0 10 15 1 0 15 16 2 0 16 3 1 0 15 6 1 0 M END $$$$
ZINC108267652	0.7	ZINC108267652 RDKit 3D 14 15 0 0 0 0 0 0 0 0999 V2000 4.2251 0.7738 0.6394 C 0 0 0 0 0 0 0 0 0 0 0 0 3.0004 1.3335 0.1787 O 0 0 0 0 0 0 0 0 0 0 0 0 1.9875 0.4166 0.2254 C 0 0 0 0 0 0 0 0 0 0 0 0 2.1380 -0.9022 0.6469 C 0 0 0 0 0 0 0 0 0 0 0 0 1.0448 -1.7650 0.6533 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.2090 -1.3178 0.2389 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.2914 -2.1956 0.2464 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.5479 -1.7668 -0.1699 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.7282 -0.4538 -0.5936 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.6576 0.4456 -0.6002 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.9043 1.8440 -1.0737 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.4107 2.7024 -0.0147 N 0 0 0 0 0 0 0 0 0 0 0 0 -0.3813 0.0178 -0.1888 C 0 0 0 0 0 0 0 0 0 0 0 0 0.7347 0.8675 -0.1881 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 2 0 4 5 1 0 5 6 2 0 6 7 1 0 7 8 2 0 8 9 1 0 9 10 2 0 10 11 1 0 11 12 1 0 10 13 1 0 13 14 2 0 14 3 1 0 13 6 1 0 M END $$$$
ZINC34619184	0.77	ZINC34619184 RDKit 3D 15 16 0 0 0 0 0 0 0 0999 V2000 4.3432 1.0380 0.3162 C 0 0 0 0 0 0 0 0 0 0 0 0 2.9878 1.4572 0.4287 O 0 0 0 0 0 0 0 0 0 0 0 0 2.1274 0.4144 0.2266 C 0 0 0 0 0 0 0 0 0 0 0 0 2.5239 -0.8893 -0.0610 C 0 0 0 0 0 0 0 0 0 0 0 0 1.5701 -1.8859 -0.2528 C 0 0 0 0 0 0 0 0 0 0 0 0 0.2112 -1.5887 -0.1595 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.7306 -2.5977 -0.3517 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.0905 -2.3182 -0.2574 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.5153 -1.0245 0.0286 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.5868 0.0032 0.2169 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.1004 1.3721 0.5361 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.3383 2.1557 -0.7349 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.9615 3.4201 -0.3872 N 0 0 0 0 0 0 0 0 0 0 0 0 -0.2095 -0.2714 0.1304 C 0 0 0 0 0 0 0 0 0 0 0 0 0.7693 0.7151 0.3209 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 2 0 4 5 1 0 5 6 2 0 6 7 1 0 7 8 2 0 8 9 1 0 9 10 2 0 10 11 1 0 11 12 1 0 12 13 1 0 10 14 1 0 14 15 2 0 15 3 1 0 14 6 1 0 M END $$$$
ZINC13738655	0.76	ZINC13738655 RDKit 3D 17 18 0 0 0 0 0 0 0 0999 V2000 5.3116 1.3837 0.0437 C 0 0 0 0 0 0 0 0 0 0 0 0 4.2727 0.3218 -0.1204 C 0 0 0 0 0 0 0 0 0 0 0 0 4.4173 -0.6485 -0.8541 O 0 0 0 0 0 0 0 0 0 0 0 0 3.1611 0.5817 0.6453 N 0 0 0 0 0 0 0 0 0 0 0 0 2.0382 -0.3200 0.6436 C 0 0 0 0 0 0 0 0 0 0 0 0 1.3101 -0.3003 -0.6848 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.0520 -0.9024 -0.5390 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.1862 -2.2837 -0.7056 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.4322 -2.8926 -0.5928 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.5589 -2.1236 -0.3182 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.4487 -0.7439 -0.1568 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.5908 0.0119 0.1133 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.5032 1.3916 0.2751 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.2650 2.0071 0.1639 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.1734 3.3571 0.3220 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.1147 1.2752 -0.1042 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.1861 -0.1150 -0.2684 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 2 0 2 4 1 0 4 5 1 0 5 6 1 0 6 7 1 0 7 8 2 0 8 9 1 0 9 10 2 0 10 11 1 0 11 12 2 0 12 13 1 0 13 14 2 0 14 15 1 0 14 16 1 0 16 17 2 0 17 7 1 0 17 11 1 0 M END $$$$
ZINC34091381	0.7	ZINC34091381 RDKit 3D 16 17 0 0 0 0 0 0 0 0999 V2000 -2.7592 1.5617 2.1250 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.0258 0.1766 1.9310 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.0741 -0.4023 1.1385 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.1598 -1.7824 0.9804 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.2249 -2.4569 0.1985 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.1986 -1.7578 -0.4357 C 0 0 0 0 0 0 0 0 0 0 0 0 0.7307 -2.4489 -1.2109 C 0 0 0 0 0 0 0 0 0 0 0 0 1.7586 -1.7654 -1.8530 C 0 0 0 0 0 0 0 0 0 0 0 0 1.8605 -0.3837 -1.7239 C 0 0 0 0 0 0 0 0 0 0 0 0 0.9416 0.3279 -0.9476 C 0 0 0 0 0 0 0 0 0 0 0 0 1.0939 1.8176 -0.8671 C 0 0 0 0 0 0 0 0 0 0 0 0 1.8074 2.2717 0.3702 C 0 0 0 0 0 0 0 0 0 0 0 0 1.2610 2.5964 1.4149 O 0 0 0 0 0 0 0 0 0 0 0 0 3.1463 2.2998 0.1647 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.1019 -0.3553 -0.2953 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.0557 0.3010 0.4957 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 2 0 4 5 1 0 5 6 2 0 6 7 1 0 7 8 2 0 8 9 1 0 9 10 2 0 10 11 1 0 11 12 1 0 12 13 2 0 12 14 1 0 10 15 1 0 15 16 2 0 16 3 1 0 15 6 1 0 M END $$$$
ZINC34091376	0.77	ZINC34091376 RDKit 3D 15 16 0 0 0 0 0 0 0 0999 V2000 -2.4278 -2.7364 0.7872 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.0631 -1.5683 0.2799 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.1604 -0.5641 0.0664 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.6764 0.6299 -0.4293 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.8316 1.7089 -0.6783 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.4627 1.6041 -0.4349 C 0 0 0 0 0 0 0 0 0 0 0 0 0.3687 2.6938 -0.6872 C 0 0 0 0 0 0 0 0 0 0 0 0 1.7362 2.6064 -0.4454 C 0 0 0 0 0 0 0 0 0 0 0 0 2.2799 1.4248 0.0491 C 0 0 0 0 0 0 0 0 0 0 0 0 1.4644 0.3181 0.3009 C 0 0 0 0 0 0 0 0 0 0 0 0 2.1001 -0.9223 0.8446 C 0 0 0 0 0 0 0 0 0 0 0 0 2.5562 -1.8186 -0.2842 C 0 0 0 0 0 0 0 0 0 0 0 0 2.8289 -3.1030 0.2533 O 0 0 0 0 0 0 0 0 0 0 0 0 0.0791 0.3995 0.0665 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.7914 -0.6726 0.3112 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 2 0 4 5 1 0 5 6 2 0 6 7 1 0 7 8 2 0 8 9 1 0 9 10 2 0 10 11 1 0 11 12 1 0 12 13 1 0 10 14 1 0 14 15 2 0 15 3 1 0 14 6 1 0 M END $$$$
ZINC5608	1.0	ZINC5608 RDKit 3D 18 19 0 0 0 0 0 0 0 0999 V2000 -1.4984 -3.3620 -0.5911 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.6439 -2.7165 -0.0477 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.4247 -1.3789 0.1297 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.4791 -0.6521 0.6754 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.3481 0.7172 0.8931 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.1618 1.3730 0.5671 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.0484 2.7441 0.7894 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.8732 3.4147 0.4650 C 0 0 0 0 0 0 0 0 0 0 0 0 0.1968 2.7145 -0.0833 C 0 0 0 0 0 0 0 0 0 0 0 0 0.1060 1.3378 -0.3068 C 0 0 0 0 0 0 0 0 0 0 0 0 1.2829 0.6409 -0.9119 C 0 0 0 0 0 0 0 0 0 0 0 0 2.2149 0.1415 0.1685 C 0 0 0 0 0 0 0 0 0 0 0 0 3.2810 -0.6263 -0.4153 N 0 0 0 0 0 0 0 0 0 0 0 0 4.2227 -1.2003 0.4042 C 0 0 0 0 0 0 0 0 0 0 0 0 5.2514 -1.9468 -0.3822 C 0 0 0 0 0 0 0 0 0 0 0 0 4.2392 -1.1267 1.6268 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.0808 0.6520 0.0122 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.2365 -0.7261 -0.1987 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 2 0 4 5 1 0 5 6 2 0 6 7 1 0 7 8 2 0 8 9 1 0 9 10 2 0 10 11 1 0 11 12 1 0 12 13 1 0 13 14 1 0 14 15 1 0 14 16 2 0 10 17 1 0 17 18 2 0 18 3 1 0 17 6 1 0 M END $$$$

Assays:

Name	Assay stage	Target	Activity
Single dose inhibition of SARS-CoV-2 cytopathic effect in VeroE6	primary assay	Organism Severe acute respiratory syndrome-related coronavirus	inactive
Single dose inhibition of SARS-CoV-2 3CL-Pro	primary assay	Replicase polyprotein 1ab	inactive

Sections: